Hi,
I would like to know if is possible to filter a bam file with a bed file. I want to keep only all reads non-overlapped with my bed file. Do you know if there is a option or a way to do that with bedtools or samtools ?
Thanks.
Sophie
Hi,
I would like to know if is possible to filter a bam file with a bed file. I want to keep only all reads non-overlapped with my bed file. Do you know if there is a option or a way to do that with bedtools or samtools ?
Thanks.
Sophie