Hi
I'm trying to install the latest release of Bedtools via Cygwin but there's a weird error during process. I know this isn't the best solution, but I do not have an other choice. Perhaps anyone knows how to fix this?
NijbroekK@UTWKS11498 /cygdrive/g/Stage_Enschede/methods/methods_Bedtoolsnew
$ make clean
* Cleaning-up BamTools API
* Cleaning up.NijbroekK@UTWKS11498 /cygdrive/g/Stage_Enschede/methods/methods_Bedtoolsnew
$ make
Building BEDTools:
=========================================================
DETECTED_VERSION = v2.20.1
CURRENT_VERSION = v2.20.1
* Creating BamTools API
- Building in src/utils/bedFile
* compiling bedFile.cpp
bedFile.cpp:1:0: warning: -fPIC ignored for target (all code is position independent) [enabled by default]
/*****************************************************************************
^
- Building in src/utils/BinTree
* compiling BinTree.cpp
BinTree.cpp:1:0: warning: -fPIC ignored for target (all code is position independent) [enabled by default]
#include "BinTree.h"
^
In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:16:0,
from ../../utils//FileRecordTools/FileRecordMgr.h:19,
from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11,
from ../../utils//Contexts/ContextBase.h:23,
from ../../utils//Contexts/ContextIntersect.h:11,
from BinTree.h:20,
from BinTree.cpp:1:
../.. ...