gene1 gene2
chr1 25 30 chr1 34 37
chr1 15 20 chr1 25 28
chr1 80 90 chr1 10 13
gene1 gene2
chr1 25 30 chr1 36 39
chr1 15 20 chr1 18 20
chr1 80 90 chr1 19 22
common gene1 uniq gene2 (when we compare file 1 with file2)
chr1 15 20 chr1 25 28
chr1 80 90 chr1 10 13
common gene1 uniq gene2 (when we compare file2 with file1)
chr1 15 20 chr1 18 20
chr1 80 90 chr1 19 22
common gene1 common gene2
chr1 25 30 chr1 34 37 chr1 25 30 chr1 36 39
common in gene1 gene2 i was able to do with bedtools pairToPair. buth i have problem with common gene1 and uniq gene2